NEWS

cpmr 0.1.1.9000

Clarified print.cpm() output when edges are not stored and hardened summary.cpm() fold fallback for legacy objects.

Stabilized GitHub Actions uploads for Codecov coverage and Test Analytics by generating and uploading JUnit test results from an explicit workspace path.

Renamed internal constant networks and includes to corr_types and inc_edges, respectively, to better reflect their purpose. In addition, the documentation which mentioned networks has been updated to use correlation types to better reflect their meaning.
Reorganized R/cpm.R so cpm() remains the entry-point function at the top, followed by print.cpm(), with internal helpers grouped below.
Improved test architecture with explicit internal-helper coverage and complete-case fold invariants.

Refactored the internal cpm() workflow into smaller helpers (normalize_inputs, resolve_include_cases, apply_confounds_regression, etc.) while preserving user-facing behavior.
Removed the obsolete internal alias regress_counfounds().
Removed broad Rfast namespace import in favor of explicit Rfast:: calls.
Updated summary.cpm() edge summarization path to avoid mutating local object fields.

Added summary() method to summarize the results of the CPM analysis (#8).
Added tidy() method to tidy the results of the CPM analysis (#10).
Support na_action argument in cpm() function to handle missing values in the input data (#2).

Added params to cpm() output to store the input arguments (#14).
Let "sum" be the default value for return_edges argument.
Let the first two dimensions of edges in the output be edges and networks, respectively.
Polish the print method of the cpm class.

Added return_edges argument to optionally set how to return edges in the output.

Fixed confounds treatment. Now confounds are used in feature selection but not in model fitting.